Discretization

Scripts that either discretize MD trajectories or that work with discretized trajectories.

Scripts that create discretized trajectories 

Create a discrete position trajectory.

`back_jump_prob`	Calculate the back-jump probability.
`back_jump_prob_discrete`	Calculate the back-jump probability resolved with respect to the states in the second discrete trajectory.
`kaplan_meier`	Calculate the state survival function using the Kaplan-Meier estimator.
`kaplan_meier_discrete`	Calculate the state survival function using the Kaplan-Meier estimator resolved with respect to the states in the second discrete trajectory.
`state_lifetime`	Calculate the average lifetime of the states in a discrete trajectory.
`state_lifetime_discrete`	Calculate the average lifetime of the states in a discrete trajectory resolved with respect to the states in a second discrete trajectory.

`plot_discrete_hex_trj`	Plot on which discrete hexagonal site a compounds resides as function of time and space in a scatter plot.
`plot_discrete_pos_trj`	Plot in which discrete position bin a compounds resides as function of time.
`plot_state_lifetime`	Plot the lifetime autocorrelation function of discrete states as function of lag time.
`plot_state_lifetime_discrete`	Plot the lifetime autocorrelation function of discrete states as function of another set of discrete states.
`plot_trans_per_state_vs_time`	Plot the number of transitions leading into or out of a given state for each frame in a discrete trajectory as function of time.