plot_discrete_pos_trj
Plot in which discrete position bin a compounds resides as function of time.
Todo
Finish docstring
This script is designed to plot the output of
scripts.discretization.discrete_pos
.
Options
- -f
Input filename. The output file of
scripts.discretization.discrete_pos
containing the discrete trajectory.- --bins
Optional second input file. The output file of
scripts.discretization.discrete_pos
containing the bin edges that were used to generate the discrete trajectory. If provided, the bins will be shown on a secondary y-axis.- -o
Output filename.
- -t
Space separated list of indices of compounds for which to plot the discrete trajectory. Indexing starts at zero. Negative indices are counted backwards. By default, the trajectories of all compounds are plotted.
- --ylabel
Label for the secondary y-axis. Is meaningless if --bins is not given. Default:
r"$z$ / A"
.- --decs
Number of decimal places for the tick labels of the secondary y-axis. Is meaningless if --bins is not given. Default:
1
.
Examples
TODO