dynamics

Functions to calculate dynamic properties.

This module can be called from mdtools via the shortcut dyn:

import mdtools as mdt
mdt.dyn  # insetad of mdt.dynamics

Functions

correct_intermittency	Correct for intermittent behavior of discrete variables stored in a sequence of arrays.
correct_intermittency_1d	Correct for intermittent behavior of discrete variables stored in a 1-dimensional array.
msd	Mean square displacement (MSD) as fuction of time according to the Einstein relation:
msd_non_diffusive	Non-diffusive Mean Square Displacement (MSD) as fuction of time.
n_restarts	Get the number of restarting points for each lag time.
replace_short_sequences	Replace consecutive occurrences of the same value that are shorter than a given minimum length by a given value.
replace_short_sequences_global	Replace consecutive occurrences of the same value that are shorter than a given minimum length by a given value at any location of the arrays.